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Publication Details
AFRICAN RESEARCH NEXUS
SHINING A SPOTLIGHT ON AFRICAN RESEARCH
agricultural and biological sciences
Geographical contrasts of Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions
Molecular Ecology, Volume 31, No. 16, Year 2022
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Description
By their paternal transmission, Y-chromosomal haplotypes are sensitive markers of population history and male-mediated introgression. Previous studies identified biallelic single-nucleotide variants in the SRY, ZFY and DDX3Y genes, which in domestic goats identified four major Y-chromosomal haplotypes, Y1A, Y1B, Y2A and Y2B, with a marked geographical partitioning. Here, we extracted goat Y-chromosomal variants from whole-genome sequences of 386 domestic goats (75 breeds) and seven wild goat species, which were generated by the VarGoats goat genome project. Phylogenetic analyses indicated domestic haplogroups corresponding to Y1B, Y2A and Y2B, respectively, whereas Y1A is split into Y1AA and Y1AB. All five haplogroups were detected in 26 ancient DNA samples from southeast Europe or Asia. Haplotypes from present-day bezoars are not shared with domestic goats and are attached to deep nodes of the trees and networks. Haplogroup distributions for 186 domestic breeds indicate ancient paternal population bottlenecks and expansions during migrations into northern Europe, eastern and southern Asia, and Africa south of the Sahara. In addition, sharing of haplogroups indicates male-mediated introgressions, most notably an early gene flow from Asian goats into Madagascar and the crossbreeding that in the 19th century resulted in the popular Boer and Anglo-Nubian breeds. More recent introgressions are those from European goats into the native Korean goat population and from Boer goat into Uganda, Kenya, Tanzania, Malawi and Zimbabwe. This study illustrates the power of the Y-chromosomal variants for reconstructing the history of domestic species with a wide geographical range. © 2022 The Authors. Molecular Ecology published by John Wiley & Sons Ltd.
Authors & Co-Authors
Nijman, Isäac Johannes
Netherlands, Utrecht
Universiteit Utrecht
Rosen, Benjamin D.
United States, Beltsville
Usda Ars Beltsville Agricultural Research Center
Bardou, Philippe
France, Castanet-tolosan
Génétique Physiologie et Systèmes D'elevage - Genphyse
Faraut, Thomas
France, Castanet-tolosan
Génétique Physiologie et Systèmes D'elevage - Genphyse
Cumer, Tristan
France, Chambery
Université Savoie Mont Blanc
Daly, Kevin Gerard
Ireland, Dublin
Trinity College Dublin
Zheng, Zhuqing
China, Yangling
Northwest A&f University
Cai, Yudong
China, Yangling
Northwest A&f University
Asadollahpour, Hojjat
China, Yangling
Northwest A&f University
Kul, Bengi Çınar
Turkey, Ankara
Ankara Üniversitesi
Zhang, Weiyi
China, Chongqing
Southwest University
Guangxin, E.
China, Chongqing
Southwest University
Ayin, A.
Japan, Kobe
Kobe University
Baird, Hayley J.
New Zealand, Dunedin
Agresearch Invermay
Bakhtin, Meirat M.
Kazakhstan, Astana
Astana Medical University
Bâlteanu, Valentin Adrian
Romania, Cluj Napoca
Universitatea de Stiinte Agricole si Medicina Veterinara Din Cluj-napoca
Barfield, Diana
Unknown Affiliation
Berger, Beate
Austria, Vienna
Universitat Fur Bodenkultur Wien
Blichfeldt, Thor
Unknown Affiliation
Boink, Geert
Unknown Affiliation
Bugiwati, Sri Rachma Aprilita
Indonesia, Makassar
Hasanuddin University
Cai, Zexi
Denmark, Aarhus
Aarhus Universitet
Carolan, Sean
Unknown Affiliation
Clark, Emily L.
United Kingdom, Edinburgh
The University of Edinburgh
Čubrić-Čurik, Vlatka
Croatia, Zagreb
University of Zagreb
Dagong, Muhammad Ihsan Andi
Indonesia, Makassar
Hasanuddin University
Dorji, Tashi Yangzome
Nepal, Kathmandu
International Centre for Integrated Mountain Development Nepal
Drew, Louise
Unknown Affiliation
Guo, Jiazhong
China, Ya'an
Sichuan Agricultural University
Hallsson, Jón Hallsteinn
Iceland, Reykjavik
Haskoli Islands
Horvat, Simon
Slovenia, Ljubljana
Univerza V Ljubljani
Kantanen, Juha
Finland, Helsinki
Natural Resources Institute Finland Luke
Kawaguchi, Fuki
Japan, Kobe
Kobe University
Kazymbet, Polat K.
Kazakhstan, Astana
Astana Medical University
Khayatzadeh, Negar
Austria, Vienna
Universitat Fur Bodenkultur Wien
Kim, Namshin
South Korea, Daejeon
Korea Research Institute of Bioscience and Biotechnology
Shah, Manoj Kumar
Unknown Affiliation
Liao, Yuying
Unknown Affiliation
Martinez, A. M.
Spain, Cordoba
Universidad de Córdoba
Masangkay, Joseph Saavedra
Philippines, Los Banos
University of the Philippines Los Banos
Masaoka, Maho
Japan, Kobe
Kobe University
Mazza, Raffaele
Unknown Affiliation
McEwan, J. C.
New Zealand, Dunedin
Agresearch Invermay
Milanesi, Marco
Italy, Viterbo
Università Degli Studi Della Tuscia Viterbo
Omar, Faruque Md
Bangladesh, Mymensingh
Bangladesh Agricultural University
Nomura, Yuto
Japan, Kobe
Kobe University
Ouchene-Khelifi, Nadjet Amina
Algeria, Blida
Université Blida 1
Pereira, Filipe
Unknown Affiliation
Sahana, Goutam
Denmark, Aarhus
Aarhus Universitet
Salavati, Mazdak
United Kingdom, Edinburgh
The University of Edinburgh
Sasazaki, Shinji
Japan, Kobe
Kobe University
Da Silva, Anne Blondeau
France, Limoges
Université de Limoges
Simčič, Mojca
Slovenia, Ljubljana
Univerza V Ljubljani
Sölkner, Johann
Austria, Vienna
Universitat Fur Bodenkultur Wien
Sutherland, Alison
Unknown Affiliation
Tigchelaar, Johannes
Unknown Affiliation
Zhang, Hongping
China, Ya'an
Sichuan Agricultural University
Ajmone-Marsan, Paolo
Italy, Piacenza
Università Cattolica Del Sacro Cuore, Campus Di Piacenza e Cremona
B̀radley, Daniel G.
Ireland, Dublin
Trinity College Dublin
Colli, Licia
Italy, Piacenza
Università Cattolica Del Sacro Cuore, Campus Di Piacenza e Cremona
Drögemüller, Cord
Switzerland, Bern
University of Bern
Jiang, Yu
China, Yangling
Northwest A&f University
Lei, Chuozhao
China, Yangling
Northwest A&f University
Mannen, Hideyuki
Japan, Kobe
Kobe University
Pompanon, François
France, Chambery
Université Savoie Mont Blanc
Tosser-Klopp, Gwenola
France, Castanet-tolosan
Génétique Physiologie et Systèmes D'elevage - Genphyse
Lenstra, Johannes A.
Netherlands, Utrecht
Universiteit Utrecht
Kijas, James W.
Unknown Affiliation
Guldbrandtsen, Bernt
Unknown Affiliation
Denoyelle, Laure
Unknown Affiliation
Sarry, Julien
Unknown Affiliation
Le Talouarn, Estel
Unknown Affiliation
Alberti, Adriana
Unknown Affiliation
Orvain, Céline
Unknown Affiliation
Engelen, Stéfan
Unknown Affiliation
Duby, Dylan
Unknown Affiliation
Martin, Pierre
Unknown Affiliation
Danchin, Coralie
Unknown Affiliation
Duclos, Delphine
Unknown Affiliation
Allain, Daniel
Unknown Affiliation
Arquet, Rémy
Unknown Affiliation
Mandonnet, Nathalie
Unknown Affiliation
Navès, Michel
Unknown Affiliation
Palhière, Isabelle
Unknown Affiliation
Rupp, Rachel
Unknown Affiliation
Pompanon, François
Unknown Affiliation
Rezaei, H. R.
Unknown Affiliation
Foran, Maeve
Unknown Affiliation
Stella, Alessandra
Unknown Affiliation
Del Corvo, Marcello D.
Unknown Affiliation
Crisà, Alessandra C.
Unknown Affiliation
Marletta, Donata
Unknown Affiliation
Crepaldi, Paola
Unknown Affiliation
Ottino, Michele
Unknown Affiliation
Randi, Ettore
Unknown Affiliation
Mujibi, Denis Fidalis N.
Unknown Affiliation
Gondwe, Timothy Nthaziyake P.
Unknown Affiliation
Benjelloun, Badr
Unknown Affiliation
Taela, Maria Da Gloria
Unknown Affiliation
Nash, Oyekanmi
Unknown Affiliation
Moaeen-Ud-Din, Muhammad
Unknown Affiliation
Visser, Carina
Unknown Affiliation
Goyache, Félix M.
Unknown Affiliation
Álvarez, Isabel
Unknown Affiliation
Amills, Marcel
Unknown Affiliation
Sánchez, Armand Sànchez Anchez
Unknown Affiliation
Capote, Juan
Unknown Affiliation
Jordana, J. Vidal
Unknown Affiliation
Pons, Àgueda L.
Unknown Affiliation
Molina Alcalá, Antonio José
Unknown Affiliation
Mruttu, Hassan Ally
Unknown Affiliation
Masiga, Clet Wandui
Unknown Affiliation
Van Tassell, Curtis Paul
Unknown Affiliation
Reecy, James M.
Unknown Affiliation
Luikart, Gordon
Unknown Affiliation
Sikosana, Joseph L.N.
Unknown Affiliation
Hoda, Anila
Unknown Affiliation
Petrit, Dobi
Unknown Affiliation
Roswitha, Baumung
Unknown Affiliation
Aziz, Fadlaoui
Unknown Affiliation
Christos, Papachristoforou
Unknown Affiliation
El-Barody, Mohamed A.A.
Unknown Affiliation
Pierre, Taberlet
Unknown Affiliation
Phillip, England
Unknown Affiliation
Albano, Beja Pereira
Unknown Affiliation
Stéphanie, Zundel
Unknown Affiliation
Michel, Trommetter
Unknown Affiliation
Erhardt, George J.
Unknown Affiliation
Horst, Brandt
Unknown Affiliation
Lühken, Gesine
Unknown Affiliation
Krugmann, Daniela
Unknown Affiliation
Shirin, Lipsky
Unknown Affiliation
Katja, Gutscher
Unknown Affiliation
Christina, Peter
Unknown Affiliation
Jutta, Roosen
Unknown Affiliation
Marco, Bertaglia
Unknown Affiliation
Andreas, Georgoudis
Unknown Affiliation
Al Tarrayrah, Jamil
Unknown Affiliation
Georgios, Kliambas
Unknown Affiliation
Olga, Kutita
Unknown Affiliation
Katerina, Karetsou
Unknown Affiliation
Christina, Ligda
Unknown Affiliation
Anton, István
Unknown Affiliation
Lazlo, Fesus
Unknown Affiliation
Gabriele, Canali
Unknown Affiliation
Elisabetta, Milanesi
Unknown Affiliation
Marco, Pellecchia
Unknown Affiliation
Antonello, Carta
Unknown Affiliation
Tiziana, Sechi
Unknown Affiliation
Mario, Cicogna
Unknown Affiliation
Francesca, Fornarelli
Unknown Affiliation
Stefano, Giovenzana
Unknown Affiliation
Marta, Marilli
Unknown Affiliation
Bordonaro, Salvatore
Unknown Affiliation
Fabio, Pilla
Unknown Affiliation
Alessio, Valentini
Unknown Affiliation
Irene, Cappuccio
Unknown Affiliation
Lorraine, Pariset
Unknown Affiliation
Mahamoud, Abo Shehada
Unknown Affiliation
van Cann, Lisette M.
Unknown Affiliation
Popielarczyk, Dominik
Unknown Affiliation
Augustin, Vlaic
Unknown Affiliation
Susana, Dunner
Unknown Affiliation
Javier, Canon
Unknown Affiliation
David, Garcia
Unknown Affiliation
Régis, Caloz
Unknown Affiliation
Gabriela, Obexer Ruff
Unknown Affiliation
Glowatzki, Marie Louise
Unknown Affiliation
Okan, Ertugrul
Unknown Affiliation
Inci, Togan
Unknown Affiliation
Evren, Koban
Unknown Affiliation
Mike, Bruford
Unknown Affiliation
Trinidad, Perez
Unknown Affiliation
Gabriela, Juma
Unknown Affiliation
Stella, Dalamitra
Unknown Affiliation
Louise, Wiskin
Unknown Affiliation
Martin, Taylor
Unknown Affiliation
Sam, Jones
Unknown Affiliation
Riccardo, Scarpa
Unknown Affiliation
Statistics
Citations: 7
Authors: 179
Affiliations: 31
Identifiers
Doi:
10.1111/mec.16579
ISSN:
09621083
Research Areas
Genetics And Genomics
Study Design
Cross Sectional Study
Study Locations
Kenya
Madagascar
Malawi
Tanzania
Uganda
Zimbabwe
Participants Gender
Male