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Publication Details
AFRICAN RESEARCH NEXUS
SHINING A SPOTLIGHT ON AFRICAN RESEARCH
BACTIBASE second release: A database and tool platform for bacteriocin characterization
BMC Microbiology, Volume 10, Article 22, Year 2010
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Description
Background. BACTIBASE is an integrated open-access database designed for the characterization of bacterial antimicrobial peptides, commonly known as bacteriocins. Description. For its second release, BACTIBASE has been expanded and equipped with additional functions aimed at both casual and power users. The number of entries has been increased by 44% and includes data collected from published literature as well as high-throughput datasets. The database provides a manually curated annotation of bacteriocin sequences. Improvements brought to BACTIBASE include incorporation of various tools for bacteriocin analysis, such as homology search, multiple sequence alignments, Hidden Markov Models, molecular modelling and retrieval through our taxonomy Browser. Conclusion. The provided features should make BACTIBASE a useful tool in food preservation or food safety applications and could have implications for the development of new drugs for medical use. BACTIBASE is available at http://bactibase.pfba-lab-tun. org. © 2010 Hammami et al; licensee BioMed Central Ltd.
Authors & Co-Authors
Hammami, Riadh
Canada, Quebec
Institut Des Nutraceutiques et Des Aliments Fonctionnels, Canada
Tunisia, Tunis
Institut Supérieur Des Sciences Biologiques Appliquées de Tunis
Zouhir, Abdelmajid
Tunisia, Tunis
Institut Supérieur Des Sciences Biologiques Appliquées de Tunis
Le Lay, Christophe
Canada, Quebec
Institut Des Nutraceutiques et Des Aliments Fonctionnels, Canada
Ben Hamida, Jeannette
Tunisia, Tunis
Institut Supérieur Des Sciences Biologiques Appliquées de Tunis
Fliss, Ismaïl
Canada, Quebec
Institut Des Nutraceutiques et Des Aliments Fonctionnels, Canada
Statistics
Citations: 290
Authors: 5
Affiliations: 2
Identifiers
Doi:
10.1186/1471-2180-10-22
Research Areas
Food Security
Health System And Policy