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AFRICAN RESEARCH NEXUS

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biochemistry, genetics and molecular biology

The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models

Bioinformatics, Volume 19, No. 4, Year 2003

Motivation: Molecular biotechnology now makes it possible to build elaborate systems models, but the systems biology community needs information standards if models are to be shared, evaluated and developed cooperatively. Results: We summarize the Systems Biology Markup Language (SBML) Level 1, a free, open, XML-based format for representing biochemical reaction networks. SBML is a software-independent language for describing models common to research in many areas of computational biology, including cell signaling pathways, metabolic pathways, gene regulation, and others.

Hucka, Michael
1. United States, Pasadena California Institute of Technology
2. Japan, Kawaguchi Japan Science and Technology Agency
Finney, A.
1. United States, Pasadena California Institute of Technology
2. Japan, Kawaguchi Japan Science and Technology Agency
Sauro, Herbert M.
1. United States, Pasadena California Institute of Technology
2. Japan, Kawaguchi Japan Science and Technology Agency
Bolouri, H.
1. United States, Pasadena California Institute of Technology
2. Japan, Kawaguchi Japan Science and Technology Agency
3. United Kingdom, Hatfield University of Hertfordshire
Doyle, J. C.
1. United States, Pasadena California Institute of Technology
Kitano, Hiroaki
1. United States, Pasadena California Institute of Technology
2. Japan, Kawaguchi Japan Science and Technology Agency
3. Japan, Tokyo Systems Biology Institute
4. Japan, Tokyo Keio University
5. Japan, Tokyo Sony Computer Science Laboratories, Inc.
Arkin, Adam Paul
1. United States, Berkeley University of California, Berkeley
Bornstein, Benjamin J.
1. United States, Pasadena Jet Propulsion Laboratory
Bray, D.
1. United Kingdom, Cambridge University of Cambridge
Cornish-Bowden, Athel J.
1. France, Paris Cnrs Centre National de la Recherche Scientifique
Cuellar, A. A.
1. New Zealand, Auckland The University of Auckland
Dronov, Serge P.
1. United Kingdom, Brentford Glaxosmithkline Plc.
Gilles, E. D.
1. Germany, Magdeburg Max Planck Institute for Dynamics of Complex Technical Systems
Ginkel, M.
1. Germany, Magdeburg Max Planck Institute for Dynamics of Complex Technical Systems
Gor, V.
1. United States, Pasadena Jet Propulsion Laboratory
Goryanin, I. I.
1. United Kingdom, Brentford Glaxosmithkline Plc.
Hedley, W. J.
1. New Zealand, Auckland The University of Auckland
Hodgman, T. C.
1. United Kingdom, Brentford Glaxosmithkline Plc.
Hofmeyr, J. H.S.
1. South Africa, Stellenbosch Stellenbosch University
Hunter, Peter J.
1. New Zealand, Auckland The University of Auckland
Juty, Nick S.
1. United Kingdom, Brentford Glaxosmithkline Plc.
Kasberger, J. L.
1. United States, Berkeley University of California, Berkeley
Kremling, Andreas
1. Germany, Magdeburg Max Planck Institute for Dynamics of Complex Technical Systems
Kummer, Ursula
1. Unknown Affiliation
Le Novère, Nicolas Le
1. United Kingdom, Cambridge University of Cambridge
Loew, L. M.
1. United States, Farmington Uconn Health
Lucio, D.
1. United States, Farmington Uconn Health
Mendes, Pedro
1. United States, Blacksburg Biocomplexity Institute of Virginia Tech
Minch, E.
1. Germany, Heidelberg Axaron Bioscience ag
Mjolsness, E. D.
1. United States, Irvine University of California, Irvine
Nakayama, Y.
1. Japan, Tokyo Keio University
Nelson, M. R.
1. United States, Princeton Physiome Sciences
Nielsen, Poul
1. New Zealand, Auckland The University of Auckland
Sakurada, T.
1. Japan, Tokyo Keio University
Schaff, James C.
1. United States, Farmington Uconn Health
Shapiro, Bruce E.
1. United States, Pasadena Jet Propulsion Laboratory
Shimizu, T. S.
1. United Kingdom, Cambridge University of Cambridge
Spence, H. D.
1. United Kingdom, Brentford Glaxosmithkline Plc.
Stelling, J.
1. Germany, Magdeburg Max Planck Institute for Dynamics of Complex Technical Systems
Takahashi, K.
1. Japan, Tokyo Keio University
Tomita, Masaru
1. Japan, Tokyo Keio University
Wagner, J.
1. United States, Farmington Uconn Health
Wang, J.
1. United States, Princeton Physiome Sciences

AFRICAN RESEARCH NEXUS

The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models

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African Research Nexus

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AFRICAN RESEARCH NEXUS

The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models

Description

Authors & Co-Authors

Disclaimer

African Research Nexus

Useful Links