Skip to content
Home
About Us
Resources
Profiles Metrics
Authors Directory
Institutions Directory
Top Authors
Top Institutions
Top Sponsors
AI Digest
Contact Us
Menu
Home
About Us
Resources
Profiles Metrics
Authors Directory
Institutions Directory
Top Authors
Top Institutions
Top Sponsors
AI Digest
Contact Us
Home
About Us
Resources
Profiles Metrics
Authors Directory
Institutions Directory
Top Authors
Top Institutions
Top Sponsors
AI Digest
Contact Us
Menu
Home
About Us
Resources
Profiles Metrics
Authors Directory
Institutions Directory
Top Authors
Top Institutions
Top Sponsors
AI Digest
Contact Us
Publication Details
AFRICAN RESEARCH NEXUS
SHINING A SPOTLIGHT ON AFRICAN RESEARCH
general
A promoter-level mammalian expression atlas
Nature, Volume 507, No. 7493, Year 2014
Notification
URL copied to clipboard!
Description
Regulated transcription controls the diversity, developmental pathways and spatial organization of the hundreds of cell types that make up a mammal. Using single-molecule cDNA sequencing, we mapped transcription start sites (TSSs) and their usage in human and mouse primary cells, cell lines and tissues to produce a comprehensive overview of mammalian gene expression across the human body. We find that few genes are truly â ̃ housekeepingâ ™, whereas many mammalian promoters are composite entities composed of several closely separated TSSs, with independent cell-type-specific expression profiles. TSSs specific to different cell types evolve at different rates, whereas promoters of broadly expressed genes are the most conserved. Promoter-based expression analysis reveals key transcription factors defining cell states and links them to binding-site motifs. The functions of identified novel transcripts can be predicted by coexpression and sample ontology enrichment analyses. The functional annotation of the mammalian genome 5 (FANTOM5) project provides comprehensive expression profiles and functional annotation of mammalian cell-type-specific transcriptomes with wide applications in biomedical research. © 2014 Macmillan Publishers Limited.
Authors & Co-Authors
Forrest, Alistair R.R.
Japan, Wako
Riken
Kawaji, Hideya
Japan, Wako
Riken
Rehli, Michael
Germany, Regensburg
Klinikum Der Universität Regensburg Und Medizinische Fakultät
Germany, Regensburg
Regensburg Center for Interventional Immunology Rci
Baillie, J. Kenneth
United Kingdom, Edinburgh
The University of Edinburgh
De Hoon, Michiel Jl L.
Japan, Wako
Riken
Haberle, Vanja
Norway, Bergen
Universitetet I Bergen
United Kingdom, London
Mrc Clinical Sciences Centre
Lassmann, Timo
Japan, Wako
Riken
Kulakovskiy, Ivan V.
Russian Federation, Moscow
Russian Academy of Sciences
Lizio, Marina
Japan, Wako
Riken
Itoh, Masayoshi
Japan, Wako
Riken
Andersson, Robin
Denmark, Copenhagen
Københavns Universitet
Mungall, Christopher John
United States, Berkeley
Lawrence Berkeley National Laboratory
Meehan, Terrence F.
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
Schmeier, Sebastian
Saudi Arabia, Thuwal
King Abdullah University of Science and Technology
New Zealand, Auckland
Massey University Auckland
Bertin, Nicolas
Japan, Wako
Riken
Jørgensen, Mette
Denmark, Copenhagen
Københavns Universitet
Dimont, Emmanuel
United States, Boston
Harvard T.h. Chan School of Public Health
Arner, Erik
Japan, Wako
Riken
Schmidl, Christian
Germany, Regensburg
Klinikum Der Universität Regensburg Und Medizinische Fakultät
Austria, Vienna
Osterreichische Akademie Der Wissenschaften
Schaefer, Ulf
Saudi Arabia, Thuwal
King Abdullah University of Science and Technology
Medvedeva, Yulia A.
Russian Federation, Moscow
Russian Academy of Sciences
Saudi Arabia, Thuwal
King Abdullah University of Science and Technology
Spain, Barcelona
Institute of Predictive and Personalized Medicine of Cancer
Plessy, Charles
Japan, Wako
Riken
Vitezic, Morana
Japan, Wako
Riken
Sweden, Stockholm
Karolinska Institutet
Severin, Jessica M.
Japan, Wako
Riken
Semple, Colin A.M.
United Kingdom, Edinburgh
The University of Edinburgh
Ishizu, Yuri
Japan, Wako
Riken
Young, Robert S.
United Kingdom, Edinburgh
The University of Edinburgh
Francescatto, Margherita
Netherlands, Amsterdam
Amsterdam Umc - Vrije Universiteit Amsterdam
Portugal, Porto
Universidade do Porto
Altschuler, Intikhab Alam
Saudi Arabia, Thuwal
King Abdullah University of Science and Technology
Albanese, Davide
Italy, Trento
Bruno Kessler Foundation
Altschule, Gabriel M.
United States, Boston
Harvard T.h. Chan School of Public Health
Arakawa, Takahiro
Japan, Wako
Riken
Archer, John A.C.
Saudi Arabia, Thuwal
King Abdullah University of Science and Technology
Arner, Peter
Sweden, Stockholm
Karolinska Institutet
Babina, Magda
Germany, Berlin
Charité – Universitätsmedizin Berlin
Rennie, Sarah
United Kingdom, Edinburgh
The University of Edinburgh
Balwierz, Piotr Jan
Switzerland, Basel
Universitat Basel
Beckhouse, Anthony G.
Australia, Brisbane
The University of Queensland
Australia, Brisbane
Australian Infectious Diseases Research Centre
Pradhan-Bhatt, Swati
United States, Newark
University of Delaware
Blake, Judith A.
United States, Bar Harbor
The Jackson Laboratory
Blumenthal, Antje
Australia, Brisbane
Australian Infectious Diseases Research Centre
Australia, Brisbane
The University of Queensland
Bodega, Beatrice
Italy, Rome
Irccs Fondazione Santa Lucia
Bonetti, Alessandro
Japan, Wako
Riken
Briggs, James Alexander
Australia, Brisbane
The University of Queensland
United States, Cambridge
Harvard University
Brombacher, Frank
Italy, Trieste
International Centre for Genetic Engineering and Biotechnology
South Africa, Cape Town
University of Cape Town
Burroughs, Alexander Maxwell
Japan, Wako
Riken
Califano, Andrea C.
United States, New York
Columbia University Irving Medical Center
Cannistraci, Carlo Vittorio
Saudi Arabia, Thuwal
King Abdullah University of Science and Technology
Germany, Dresden
Technische Universität Dresden
Carbajo, Daniel
United States, New York
Albert Einstein College of Medicine of Yeshiva University
Chen, Yun
Denmark, Copenhagen
Københavns Universitet
Chierici, Marco
Italy, Trento
Bruno Kessler Foundation
Ciani, Yari
Italy, Trieste
Laboratorio Nazionale Del Consorzio Interuniversitario Per le Biotecnologie Lncib
Clevers, Hans C.
Netherlands, Utrecht
Hubrecht Institute for Developmental Biology and Stem Cell Research - Knaw
Netherlands, Amsterdam
Royal Netherlands Academy of Arts and Sciences - Knaw
Netherlands, Utrecht
University Medical Center Utrecht
Dalla, Emiliano
Italy, Trieste
Laboratorio Nazionale Del Consorzio Interuniversitario Per le Biotecnologie Lncib
Davis, Carrie Anne
United States, Cold Spring Harbor
Cold Spring Harbor Laboratory
Detmar, Michael J.
Switzerland, Zurich
Eth Zürich
Diehl, Alexander D.
United States, Buffalo
University at Buffalo, the State University of new York
Dohi, Taeko
Japan, Ichikawa
Kohnodai Hospital
Drabløs, Finn
Norway, Trondheim
Norges Teknisk-naturvitenskapelige Universitet
Edge, Albert S.B.
United States, Boston
Harvard Medical School
Edinger, Matthias G.
Germany, Regensburg
Klinikum Der Universität Regensburg Und Medizinische Fakultät
Germany, Regensburg
Regensburg Center for Interventional Immunology Rci
Ekwall, Karl
Sweden, Stockholm
Karolinska Institutet
Endoh, Mitsuhiro
Japan, Yokohama
Riken Center for Integrative Medical Sciences
Enomoto, Hideki
Japan, Kobe
Riken Center for Biosystems Dynamics Research
Fagiolini, Michela
United States, Boston
Harvard Medical School
Fairbairn, Lynsey
United Kingdom, Edinburgh
The University of Edinburgh
Fang, Hai
United Kingdom, Bristol
University of Bristol
Farach Carson, Mary C.
United States, Houston
Rice University
Faulkner, Geoffrey John
Australia, Brisbane
Mater Medical Research Institute
Favorov, Alexander V.
Russian Federation, Moscow
Russian Academy of Sciences
United States, Baltimore
Johns Hopkins School of Medicine
Russian Federation, Moscow
State Research Institute of Genetics and Selection of Industrial Microorganisms of Nrc «kurchatov Institute»
Fisher, Malcolm E.
United Kingdom, Edinburgh
The University of Edinburgh
Frith, Martin C.
Japan, Tokyo
Japan Biological Information Research Center
Fujita, Rie
Japan, Sendai
Graduate School of Medicine
Fukuda, Shiro
Japan, Wako
Riken
Furlanello, Cesare
Italy, Trento
Bruno Kessler Foundation
Furuno, Masaaki
Japan, Wako
Riken
Furusawa, Junichi
Japan, Yokohama
Riken Center for Integrative Medical Sciences
Japan, Tokyo
Keio University
Geijtenbeek, Teunis B.H.
Netherlands, Amsterdam
Amsterdam Umc - University of Amsterdam
Gibson, Andrew P.
Netherlands, Leiden
Leids Universitair Medisch Centrum
Gingeras, Thomas R.
United States, Cold Spring Harbor
Cold Spring Harbor Laboratory
Goldowitz, Daniel
Canada, Vancouver
The University of British Columbia
Gough, Julian
United Kingdom, Bristol
University of Bristol
Guhl, Sven
Germany, Berlin
Charité – Universitätsmedizin Berlin
Guler, Reto
Italy, Trieste
International Centre for Genetic Engineering and Biotechnology
South Africa, Cape Town
University of Cape Town
Gustincich, Stefano
Italy, Trieste
Scuola Internazionale Superiore Di Studi Avanzati
Ha, Thomas J.
Canada, Vancouver
The University of British Columbia
Hamaguchi, Masahide
Japan, Suita
Wpi Immunology Frontier Research Center, Osaka University
Hara, Mitsuko
Japan, Wako
Riken
Harbers, Matthias
Japan, Wako
Riken
Harshbarger, Jayson
Japan, Wako
Riken
Hasegawa, Akira
Japan, Wako
Riken
Hasegawa, Yuki
Japan, Wako
Riken
Hashimoto, Takehiro
Japan, Wako
Riken
Herlyn, Meenhard M.
United States, Philadelphia
The Wistar Institute
Hitchens, Kelly J.
Australia, Brisbane
The University of Queensland
Australia, Brisbane
Australian Infectious Diseases Research Centre
Ho Sui, Shannan J.
United States, Boston
Harvard T.h. Chan School of Public Health
Hofmann, Oliver M.
United States, Boston
Harvard T.h. Chan School of Public Health
Hoof, Ilka
Denmark, Copenhagen
Københavns Universitet
Hori, Fumi
Japan, Wako
Riken
Huminiecki, Lucasz
Sweden, Stockholm
Karolinska Institutet
Iida, Kei
Japan, Wako
Riken
Ikawa, Tomokatsu
Japan, Yokohama
Riken Center for Integrative Medical Sciences
Jankovic, Boris R.
Saudi Arabia, Thuwal
King Abdullah University of Science and Technology
Jia, Hui
United States, Detroit
Wayne State University
Kaczkowski, Bogumił
Japan, Wako
Riken
Kai, Chieko
Japan, Tokyo
The University of Tokyo
Kaida, Kaoru
Japan, Wako
Riken
Kaiho, Ai
Japan, Wako
Riken
Kanamori-Katayama, Mutsumi
Japan, Wako
Riken
Kasianov, Artem S.
Russian Federation, Moscow
Russian Academy of Sciences
Kasukawa, Takeya
Japan, Wako
Riken
Katayama, Shintaro
Japan, Wako
Riken
Kato, Sachi
Japan, Wako
Riken
Kawamoto, Hiroshi
Japan, Yokohama
Riken Center for Integrative Medical Sciences
Kawamura, Yuki I.
Japan, Ichikawa
Kohnodai Hospital
Kawashima, Tsugumi
Japan, Wako
Riken
Kempfle, Judith Susanne
United States, Boston
Harvard Medical School
Kenna, Tony J.
Australia, Brisbane
The University of Queensland
Kere, Juha F.
Sweden, Stockholm
Karolinska Institutet
Sweden, Solna
Science for Life Laboratory
Khachigian, Levon M.
Australia, Sydney
Unsw Sydney
Kitamura, Toshio
Japan, Tokyo
The University of Tokyo
Klinken, Svend Peter
Australia, Perth
The Harry Perkins Institute of Medical Research
Knox, Alan J.
United Kingdom, Nottingham
Nottingham City Hospital
Kojima, Miki
Japan, Wako
Riken
Kojima, Soichi
Japan, Wako
Riken
Kondo, Naoto
Japan, Wako
Riken
Koseki, Haruhiko
Japan, Yokohama
Riken Center for Integrative Medical Sciences
Koyasu, Shigeo
Japan, Yokohama
Riken Center for Integrative Medical Sciences
Japan, Tokyo
Keio University
Kubosaki, Atsutaka
Japan, Wako
Riken
Kwon, Andrew Tae Jun
Japan, Wako
Riken
Laros, Jeroen F.J.
Netherlands, Leiden
Leids Universitair Medisch Centrum
Lee, Weonju
South Korea, Daegu
Kyungpook National University School of Medicine
Lennartsson, Andreas
Sweden, Stockholm
Karolinska Institutet
Lilje, Berit
Denmark, Copenhagen
Københavns Universitet
Lipovich, Leonard
United States, Detroit
Wayne State University
Mackay-Sim, Alan
Australia, Brisbane
Griffith University
Manabe, Riichiroh
Japan, Wako
Riken
Mar, Jessica C.
United States, New York
Albert Einstein College of Medicine of Yeshiva University
Marchand, Benoît
Saudi Arabia, Thuwal
King Abdullah University of Science and Technology
Mejhert, Niklas
Sweden, Stockholm
Karolinska Institutet
Meynert, Alison M.
United Kingdom, Edinburgh
The University of Edinburgh
Mizuno, Yosuke
Japan, Moroyama
Saitama Medical University
Morikawa, Hiromasa
Japan, Suita
Wpi Immunology Frontier Research Center, Osaka University
Morimoto, Mitsuru
Japan, Kobe
Riken Center for Biosystems Dynamics Research
Moro, Kazuyo
Japan, Yokohama
Riken Center for Integrative Medical Sciences
Japan, Tokyo
Keio University
Japan, Kawaguchi
Japan Science and Technology Agency
Motohashi, Hozumi
Japan, Sendai
Graduate School of Medicine
L Mummery, Christine L.
Netherlands, Leiden
Leids Universitair Medisch Centrum
Murata, Mitsuyoshi
Japan, Wako
Riken
Nagao-Sato, Sayaka
Japan, Wako
Riken
Nakachi, Yutaka
Japan, Moroyama
Saitama Medical University
Nakamura, Yukio
Japan, Tsukuba
Riken Bioresource Research Center
Nakazato, Kenichi
Japan, Wako
Riken
van Nimwegen, Erik
Switzerland, Basel
Universitat Basel
Ninomiya, Noriko
Japan, Wako
Riken
Nishiyori, Hiromi
Japan, Wako
Riken
Noma, Shohei
Japan, Wako
Riken
Ogishima, Soichi
Japan, Tokyo
Tokyo Medical and Dental University
Japan, Sendai
Tohoku University
Okada, Mariko Hatakeyama
Japan, Yokohama
Riken Center for Integrative Medical Sciences
Okazaki, Yasushi
Japan, Moroyama
Saitama Medical University
Orlando, Valerio
Italy, Rome
Irccs Fondazione Santa Lucia
Saudi Arabia, Thuwal
King Abdullah University of Science and Technology
Pain, Arnab P.
Saudi Arabia, Thuwal
King Abdullah University of Science and Technology
Passier, Robert C.J.J.
Netherlands, Leiden
Leids Universitair Medisch Centrum
Piazza, Silvano
Italy, Trieste
Laboratorio Nazionale Del Consorzio Interuniversitario Per le Biotecnologie Lncib
Prendergast, James G.D.
United Kingdom, Edinburgh
The University of Edinburgh
Rackham, Owen J.L.
United Kingdom, Bristol
University of Bristol
Ramilowski, Jordan A.
Japan, Wako
Riken
Rashid, Mamoon
Saudi Arabia, Thuwal
King Abdullah University of Science and Technology
Ravasi, Timothy
Saudi Arabia, Thuwal
King Abdullah University of Science and Technology
Rizzu, Patrizia
Netherlands, Amsterdam
Amsterdam Umc - Vrije Universiteit Amsterdam
Roy, Sugata
Japan, Wako
Riken
Saijyo, Eri
Japan, Wako
Riken
Sajantila, Antti
Finland, Helsinki
Helsingin Yliopisto
Saka, Akiko
Japan, Wako
Riken
Sakaguchi, Shimon
Japan, Suita
Wpi Immunology Frontier Research Center, Osaka University
Sakai, Mizuho
Japan, Wako
Riken
Savvi, Suzana
Italy, Trieste
International Centre for Genetic Engineering and Biotechnology
South Africa, Cape Town
University of Cape Town
Saxena, Alka
Japan, Wako
Riken
United Kingdom, London
Guy's Hospital
Schwegmann, Anita
Italy, Trieste
International Centre for Genetic Engineering and Biotechnology
South Africa, Cape Town
University of Cape Town
Sheng, Guojun
Japan, Kobe
Riken Center for Biosystems Dynamics Research
Shin, Jay W.
Japan, Wako
Riken
Simon, Christophe
Japan, Wako
Riken
Suzuki, Naoko
Japan, Wako
Riken
't Hoen, Peter A.C.
Netherlands, Leiden
Leids Universitair Medisch Centrum
Tagami, Michihira
Japan, Wako
Riken
Thompson, Mark K.
Netherlands, Leiden
Leids Universitair Medisch Centrum
van de Wetering, Marc L.
Netherlands, Utrecht
Hubrecht Institute for Developmental Biology and Stem Cell Research - Knaw
Verardo, Roberto
Italy, Trieste
Laboratorio Nazionale Del Consorzio Interuniversitario Per le Biotecnologie Lncib
Vorontsov, Ilya E.
Russian Federation, Moscow
Russian Academy of Sciences
Wasserman, Wyeth W.
Canada, Vancouver
The University of British Columbia
Watanabe, Shoko
Japan, Wako
Riken
Wells, Christine A.
Australia, Brisbane
The University of Queensland
Australia, Brisbane
Australian Infectious Diseases Research Centre
Yamamoto, Masayuki
Japan, Sendai
Graduate School of Medicine
Yoshida, Shigehiro
Japan, Wako
Riken
Summers, Kim M.
United Kingdom, Edinburgh
The University of Edinburgh
Suzuki, Harukazu
Japan, Wako
Riken
Germany, Regensburg
Klinikum Der Universität Regensburg Und Medizinische Fakultät
Daub, Carsten Olivier
Japan, Wako
Riken
Kawai, Jun
Japan, Wako
Riken
Heutink, Peter
Netherlands, Amsterdam
Amsterdam Umc - Vrije Universiteit Amsterdam
Hide, Winston A.
United States, Boston
Harvard T.h. Chan School of Public Health
Freeman, Tom C.
United Kingdom, Edinburgh
The University of Edinburgh
Lenhard, Boris
United Kingdom, London
Mrc Clinical Sciences Centre
Norway, Bergen
Universitetet I Bergen
Bajic, Vladimir B.
Saudi Arabia, Thuwal
King Abdullah University of Science and Technology
Taylor, Martin S.
United Kingdom, Edinburgh
The University of Edinburgh
Makeev, Vsevolod J.
Russian Federation, Moscow
Russian Academy of Sciences
Russian Federation, Dolgoprudny
Moscow Institute of Physics and Technology
Sandelin, Albin
Denmark, Copenhagen
Københavns Universitet
Hume, David A.
United Kingdom, Edinburgh
The University of Edinburgh
Carninci, Piero
Japan, Wako
Riken
Hayashizaki, Yoshihide
Japan, Wako
Riken
Statistics
Citations: 1,714
Authors: 208
Affiliations: 79
Identifiers
Doi:
10.1038/nature13182
ISSN:
00280836
Research Areas
Genetics And Genomics