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Publication Details
AFRICAN RESEARCH NEXUS
SHINING A SPOTLIGHT ON AFRICAN RESEARCH
agricultural and biological sciences
Virion-Associated Nucleic Acid-Based Metagenomics: A Decade of Advances in Molecular Characterization of Plant Viruses
Phytopathology, Volume 112, No. 11, Year 2022
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Description
Over the last decade, viral metagenomic studies have resulted in the discovery of thousands of previously unknown viruses. These studies are likely to play a pivotal role in obtaining an accurate and robust understanding of how viruses affect the stability and productivity of ecosystems. Among the metagenomics-based approaches that have been developed since the beginning of the 21st century, shotgun metagenomics applied specifically to virion-associated nucleic acids (VANA) has been used to disentangle the diversity of the viral world. We summarize herein the results of 24 VANA-based studies, focusing on plant and insect samples conducted over the last decade (2010 to 2020). Collectively, viruses from 85 different families were reliably detected in these studies, including capsidless RNA viruses that replicate in fungi, oomycetes, and plants. Finally, strengths and weaknesses of the VANA approach are summarized and perspectives of applications in detection, epidemiological surveillance, environmental monitoring, and ecology of plant viruses are provided. [Formula: see text] Copyright © 2022 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
Authors & Co-Authors
Moubset, Oumaima
France, Paris
Cirad
France, Montpellier
Université de Montpellier
François, Sarah
United Kingdom, Oxford
University of Oxford
Maclot, François
Belgium, Liege
Université de Liège
Palanga, Essowè
Togo
Institut Togolais de Recherche Agronomique (itra-crass)
Julian, Charlotte
France, Paris
Cirad
France, Montpellier
Université de Montpellier
Claude, Lisa
France, Paris
Cirad
France, Montpellier
Université de Montpellier
Fernandez, Emmanuel
France, Paris
Cirad
France, Montpellier
Université de Montpellier
Rott, Philippe
France, Paris
Cirad
France, Montpellier
Université de Montpellier
Daugrois, Jean Heinrich
France, Paris
Cirad
France, Montpellier
Université de Montpellier
Antoine-Lorquin, Aymeric
France, Montpellier
Université de Montpellier
Bernardo, Pauline
Unknown Affiliation
Blouin, Arnaud Gérard
Belgium, Liege
Université de Liège
Switzerland, Wadenswil
Forschungsanstalt Agroscope Changins-wadenswil
Temple, Coline
Belgium, Liege
Université de Liège
Kraberger, Simona J.
United States, Tempe
School of Life Sciences
Fontenele, Rafaela Salgado
United States, Tempe
School of Life Sciences
Harkins, Gordon William
South Africa, Bellville
University of the Western Cape
Ma, Yuxin
France, Bordeaux
Université de Bordeaux
Marais, Armelle
France, Bordeaux
Université de Bordeaux
Candresse, Thierry
France, Bordeaux
Université de Bordeaux
Chehida, Selim Ben
France, Saint-denis
Peuplements Végétaux et Bioagresseurs en Milieu Tropical Pvbmt
Lefeuvre, Pierre F.
France, Saint-denis
Peuplements Végétaux et Bioagresseurs en Milieu Tropical Pvbmt
Lett, Jean Michel
France, Saint-denis
Peuplements Végétaux et Bioagresseurs en Milieu Tropical Pvbmt
Varsani, Arvind
United States, Tempe
School of Life Sciences
South Africa, Cape Town
University of Cape Town
Massart, Sébastien
Belgium, Liege
Université de Liège
Ogliastro, Mylène
United Kingdom, Oxford
University of Oxford
Martin, Darren Patrick
South Africa, Cape Town
University of Cape Town
Filloux, Denis
France, Paris
Cirad
France, Montpellier
Université de Montpellier
Roumagnac, Philippe
France, Paris
Cirad
France, Montpellier
Université de Montpellier
Statistics
Citations: 28
Authors: 28
Affiliations: 11
Identifiers
Doi:
10.1094/PHYTO-03-22-0096-RVW
ISSN:
0031949X
Research Areas
Health System And Policy