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Publication Details
AFRICAN RESEARCH NEXUS
SHINING A SPOTLIGHT ON AFRICAN RESEARCH
biochemistry, genetics and molecular biology
InterPro: The integrative protein signature database
Nucleic Acids Research, Volume 37, No. SUPPL. 1, Year 2009
Notification
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Description
The InterPro database (http://www.ebi.ac.uk/interpro/) integrates together predictive models or 'signatures' representing protein domains, families and functional sites from multiple, diverse source databases: Gene3D, PANTHER, Pfam, PIRSF, PRINTS, ProDom, PROSITE, SMART, SUPERFAMILY and TIGRFAMs. Integration is performed manually and approximately half of the total ∼ 58 000 signatures available in the source databases belong to an InterPro entry. Recently, we have started to also display the remaining un-integrated signatures via our web interface. Other developments include the provision of non-signature data, such as structural data, in new XML files on our FTP site, as well as the inclusion of matchless UniProtKB proteins in the existing match XML files. The web interface has been extended and now links out to the ADAN predicted protein-protein interaction database and the SPICE and Dasty viewers. The latest public release (v18.0) covers 79.8% of UniProtKB (v14.1) and consists of 16 549 entries. InterPro data may be accessed either via the web address above, via web services, by downloading files by anonymous FTP or by using the InterProScan search software (http://www.ebi.ac.uk/Tools/InterProScan/). © 2008 The Author(s).
Authors & Co-Authors
Hunter, Sarah
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
Apweiler, Rolf
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
Attwood, Teresa
United Kingdom, Manchester
The University of Manchester
Bairoch, Amos
Switzerland, Lausanne
Sib Swiss Institute of Bioinformatics
Bateman, Alex G.
United Kingdom, Hinxton
Wellcome Sanger Institute
Binns, David
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
Bork, Peer
Germany, Heidelberg
European Molecular Biology Laboratory Heidelberg
Das, Ujjwal
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
Daugherty, Louise C.
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
Duquenne, Lauranne
France, Villeurbanne
Université Claude Bernard Lyon 1
Finn, Robert Daniel
United Kingdom, Hinxton
Wellcome Sanger Institute
Gough, Julian
United Kingdom, Bristol
University of Bristol
Haft, Daniel H.
United States, Rockville
J. Craig Venter Institute
Hulo, Nicolas
Switzerland, Lausanne
Sib Swiss Institute of Bioinformatics
Kahn, Daniel
France, Villeurbanne
Université Claude Bernard Lyon 1
Kelly, Elizabeth
South Africa, Cape Town
University of Cape Town
Laugraud, Aurélie
France, Villeurbanne
Université Claude Bernard Lyon 1
Letunić, Ivica
Germany, Heidelberg
European Molecular Biology Laboratory Heidelberg
Lonsdale, David
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
López, Rodrigo G.
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
Madera, Martin
United Kingdom, Bristol
University of Bristol
Maslen, John
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
McAnulla, Craig
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
McDowall, Jennifer
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
Mistry, Jaina
United Kingdom, Hinxton
Wellcome Sanger Institute
Mitchell, Alex Lawson
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
United Kingdom, Manchester
The University of Manchester
Mulder, Nicky J.
South Africa, Cape Town
University of Cape Town
Natale, Darren A.
United States, Washington, D.c.
Georgetown University Medical Center
Orengo, Christine Anne
United Kingdom, London
University College London
Quinn, Antony F.
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
Selengut, Jeremy D.
United States, Rockville
J. Craig Venter Institute
Sigrist, Christian J.A.
Switzerland, Lausanne
Sib Swiss Institute of Bioinformatics
Thimma, Manjula
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
Thomas, Paul D.
United States, Menlo Park
Sri International
Valentin, Franck
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
Wilson, Derek
United Kingdom, Cambridge
The Medical Research Council Laboratory of Molecular Biology
Wu, Cathy H.
United States, Washington, D.c.
Georgetown University Medical Center
Yeats, Corin A.
United Kingdom, London
University College London
Statistics
Citations: 1,902
Authors: 38
Affiliations: 13
Identifiers
Doi:
10.1093/nar/gkn785
ISSN:
03051048
e-ISSN:
13624962