RDP2: Recombination detection and analysis from sequence alignments

Summary: RDP2 is a Windows 95/XP program that examines nucleoticle sequence alignments and attempts to identify recombinant sequences and recombination breakpoints using 10 published recombination detection methods, including GENECONV, BOOTSCAN, MAXIMUM χ2, CHIMAERA and SISTER SCANNING. The program enables fast automated analysis of large alignments (up to 300 sequences containing 13 000 sites), and interactive exploration, management and verification of results with different recombination detection and tree drawing methods. © Oxford University Press 2004; all rights reserved.