Skip to content
Home
About Us
Resources
Profiles Metrics
Authors Directory
Institutions Directory
Top Authors
Top Institutions
Top Sponsors
AI Digest
Contact Us
Menu
Home
About Us
Resources
Profiles Metrics
Authors Directory
Institutions Directory
Top Authors
Top Institutions
Top Sponsors
AI Digest
Contact Us
Home
About Us
Resources
Profiles Metrics
Authors Directory
Institutions Directory
Top Authors
Top Institutions
Top Sponsors
AI Digest
Contact Us
Menu
Home
About Us
Resources
Profiles Metrics
Authors Directory
Institutions Directory
Top Authors
Top Institutions
Top Sponsors
AI Digest
Contact Us
Publication Details
AFRICAN RESEARCH NEXUS
SHINING A SPOTLIGHT ON AFRICAN RESEARCH
biochemistry, genetics and molecular biology
ASTD: The Alternative Splicing and Transcript Diversity database
Genomics, Volume 93, No. 3, Year 2009
Notification
URL copied to clipboard!
Description
The Alternative Splicing and Transcript Diversity database (ASTD) gives access to a vast collection of alternative transcripts that integrate transcription initiation, polyadenylation and splicing variant data. Alternative transcripts are derived from the mapping of transcribed sequences to the complete human, mouse and rat genomes using an extension of the computational pipeline developed for the ASD (Alternative Splicing Database) and ATD (Alternative Transcript Diversity) databases, which are now superseded by ASTD. For the human genome, ASTD identifies splicing variants, transcription initiation variants and polyadenylation variants in 68%, 68% and 62% of the gene set, respectively, consistent with current estimates for transcription variation. Users can access ASTD through a variety of browsing and query tools, including expression state-based queries for the identification of tissue-specific isoforms. Participating laboratories have experimentally validated a subset of ASTD-predicted alternative splice forms and alternative polyadenylation forms that were not previously reported. The ASTD database can be accessed at http://www.ebi.ac.uk/astd. © 2008 Elsevier Inc. All rights reserved.
Authors & Co-Authors
Koscielny, Gautier
United Kingdom, London
Wellcome Trust
Texier, Vincent Le
United Kingdom, London
Wellcome Trust
Gopalakrishnan, Chellappa
United Kingdom, London
Wellcome Trust
Kumanduri, Vasudev
United Kingdom, London
Wellcome Trust
Riethoven, Jean Jack M.
United Kingdom, London
Wellcome Trust
Nardone, Francesco
United Kingdom, London
Wellcome Trust
Stanley, Eleanor J.
United Kingdom, London
Wellcome Trust
Fallsehr, Christine
Germany, Heidelberg
European Molecular Biology Laboratory Heidelberg
Hofmann, Oliver M.
South Africa, Bellville
University of the Western Cape
Kull, Meelis
Estonia, Tartu
Tartu Ülikooli Genoomika Instituut
Estonia, Tartu
Tartu Ülikool
Harrington, Eoghan Donal
Germany, Heidelberg
European Molecular Biology Laboratory Heidelberg
Boué, Stéphanie
Germany, Heidelberg
European Molecular Biology Laboratory Heidelberg
Eyras, Eduardo
Spain, Barcelona
Institut Municipal D'investigacio Medica
Plass, Mireya
Spain, Barcelona
Institut Municipal D'investigacio Medica
Lopez, Fabrice
France, Marseille
Technologie Avancée Pour le Génome et la Clinique
Ritchie, William
France, Marseille
Technologie Avancée Pour le Génome et la Clinique
Moucadel, Virginie
France, Marseille
Technologie Avancée Pour le Génome et la Clinique
Ara, Takeshi
France, Marseille
Technologie Avancée Pour le Génome et la Clinique
Pospisil, Heike
Germany, Hamburg
Universität Hamburg
Herrmann, Alexander
Germany, Kiel
Christian-albrechts-universität zu Kiel
G Reich, Jens
Germany, Berlin
Max Delbruck Center for Molecular Medicine
Guigó, Roderic
Spain, Barcelona
Institut Municipal D'investigacio Medica
Spain, Barcelona
Centro de Regulacion Genomica, Barcelona
Bork, Peer
Germany, Heidelberg
European Molecular Biology Laboratory Heidelberg
von Knebel-Doeberitz, Magnus
Germany, Heidelberg
Universität Heidelberg
Vilo, Jaak
Estonia, Tartu
Tartu Ülikooli Genoomika Instituut
Estonia, Tartu
Tartu Ülikool
Hide, Winston A.
South Africa, Bellville
University of the Western Cape
Apweiler, Rolf
United Kingdom, London
Wellcome Trust
Thanaraj, Thangavel Alphonse
United Kingdom, London
Wellcome Trust
Gautheret, Daniel
France, Marseille
Technologie Avancée Pour le Génome et la Clinique
Statistics
Citations: 109
Authors: 29
Affiliations: 12
Identifiers
Doi:
10.1016/j.ygeno.2008.11.003
ISSN:
08887543
e-ISSN:
10898646
Research Areas
Genetics And Genomics
Health System And Policy