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Publication Details
AFRICAN RESEARCH NEXUS
SHINING A SPOTLIGHT ON AFRICAN RESEARCH
biochemistry, genetics and molecular biology
An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics
Cell, Volume 173, No. 2, Year 2018
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Description
For a decade, The Cancer Genome Atlas (TCGA) program collected clinicopathologic annotation data along with multi-platform molecular profiles of more than 11,000 human tumors across 33 different cancer types. TCGA clinical data contain key features representing the democratized nature of the data collection process. To ensure proper use of this large clinical dataset associated with genomic features, we developed a standardized dataset named the TCGA Pan-Cancer Clinical Data Resource (TCGA-CDR), which includes four major clinical outcome endpoints. In addition to detailing major challenges and statistical limitations encountered during the effort of integrating the acquired clinical data, we present a summary that includes endpoint usage recommendations for each cancer type. These TCGA-CDR findings appear to be consistent with cancer genomics studies independent of the TCGA effort and provide opportunities for investigating cancer biology using clinical correlates at an unprecedented scale. Analysis of clinicopathologic annotations for over 11,000 cancer patients in the TCGA program leads to the generation of TCGA Clinical Data Resource, which provides recommendations of clinical outcome endpoint usage for 33 cancer types. © 2018 Elsevier Inc.
Authors & Co-Authors
Lichtenberg, Tara M.
United States, Columbus
Nationwide Children’s Hospital
Hoadley, Katherine A.
United States, Chapel Hill
The University of North Carolina at Chapel Hill
Lazar, A. J.
United States, Houston
The University of Texas Md Anderson Cancer Center
Cherniack, Andrew D.
United States, Cambridge
Massachusetts Institute of Technology
Levine, Douglas A.
United States, New York
Nyu Langone Health
Lee, Adrian Susan
United States, Pittsburgh
Magee-womens Research Institute
Omberg, Larsson
United States, Seattle
Sage Bionetworks
Shriver, Craig D.
United States, Bethesda
Walter Reed National Military Medical Center
Thorsson, Vesteinn
United States, Seattle
Institute for Systems Biology
Caesar-Johnson, Samantha J.
Unknown Affiliation
Demchok, John A.
Unknown Affiliation
Felau, Ina
Unknown Affiliation
Kasapi, Melpomeni
Unknown Affiliation
Ferguson, Martin L.
Unknown Affiliation
Hutter, Carolyn M.
Unknown Affiliation
Sofia, Heidi J.
Unknown Affiliation
Tarnuzzer, Roy W.
Unknown Affiliation
Zenklusen, Jean Claude
Unknown Affiliation
Chudamani, Sudha
Unknown Affiliation
Liu, Jia
Unknown Affiliation
Lolla, Laxmi
Unknown Affiliation
Naresh, Rashi
Unknown Affiliation
Pihl, Todd D.
Unknown Affiliation
Sun, Qiang
Unknown Affiliation
Wan, Yunhu
Unknown Affiliation
Wu, Ye
Unknown Affiliation
Cho, Juok
Unknown Affiliation
DeFreitas, Timothy
Unknown Affiliation
Frazer, Scott
Unknown Affiliation
Gehlenborg, Nils
Unknown Affiliation
Getz, Gad A.
Unknown Affiliation
Heiman, David I.
Unknown Affiliation
Kim, Jaegil
Unknown Affiliation
Lawrence, Michael S.
Unknown Affiliation
Lin, Pei
Unknown Affiliation
Meier, Samuel R.
Unknown Affiliation
Noble, Michael S.
Unknown Affiliation
Saksena, Gordon
Unknown Affiliation
Voet, Doug
Unknown Affiliation
Zhang, Hailei
Unknown Affiliation
Bernard, Brady M.
Unknown Affiliation
Chambwe, Nyasha
Unknown Affiliation
Dhankani, Varsha
Unknown Affiliation
Knijnenburg, Theo A.
Unknown Affiliation
Kramer, Roger W.
Unknown Affiliation
Leinonen, Kalle
Unknown Affiliation
Liu, Yuexin
Unknown Affiliation
Miller, Michael B.
Unknown Affiliation
Reynolds, Sheila M.
Unknown Affiliation
Shmulevich, Ilya
Unknown Affiliation
Zhang, Wei
Unknown Affiliation
Akbani, Rehan
Unknown Affiliation
Broom, Bradley M.
Unknown Affiliation
Hegde, Apurva M.
Unknown Affiliation
Ju, Zhenlin
Unknown Affiliation
Kanchi, Rupa S.
Unknown Affiliation
Korkut, Anil
Unknown Affiliation
Li, Jun
Unknown Affiliation
Liang, Han
Unknown Affiliation
Ling, Shiyun
Unknown Affiliation
Liu, Wenbin
Unknown Affiliation
Lu, Yiling
Unknown Affiliation
Mills, Gordon B.
Unknown Affiliation
Ng, Kwokshing
Unknown Affiliation
Rao, Arvind U.K.
Unknown Affiliation
Ryan, Michael C.
Unknown Affiliation
Wang, Jing
Unknown Affiliation
Armenia, Joshua
Unknown Affiliation
Chatila, Walid K.
Unknown Affiliation
de Bruijn, Ino
Unknown Affiliation
Sánchez-Vega, Francisco
Unknown Affiliation
Schultz, Nikolaus D.
Unknown Affiliation
Yau, Christina
Unknown Affiliation
Parker, Joel S.
Unknown Affiliation
Wilkerson, Matthew D.
Unknown Affiliation
Bowlby, Reanne
Unknown Affiliation
Brooks, Denise B.
Unknown Affiliation
Jones, Steven J.M.
Unknown Affiliation
Ma, Yussanne P.
Unknown Affiliation
Marra, Marco A.
Unknown Affiliation
Moore, Richard A.
Unknown Affiliation
Mungall, Andrew J.
Unknown Affiliation
Mungall, Karen L.
Unknown Affiliation
Robertson, Andrew Gordon
Unknown Affiliation
Schein, Jacqueline E.
Unknown Affiliation
Berger, Ashton C.
Unknown Affiliation
Beroukhim, Rameen
Unknown Affiliation
Gabriel, Stacey Bolk
Unknown Affiliation
Ha, Gavin
Unknown Affiliation
Meyerson, Matthew L.
Unknown Affiliation
Schumacher, Steven E.
Unknown Affiliation
Xu, Jian M.
Unknown Affiliation
van den Berg, David J.
Unknown Affiliation
Jones, Corbin D.
Unknown Affiliation
Roach, Jeffrey M.
Unknown Affiliation
Fan, Huihui
Unknown Affiliation
Laird, Peter W.
Unknown Affiliation
Shen, Hui
Unknown Affiliation
Chang, Kyle
Unknown Affiliation
Creighton, Chad J.
Unknown Affiliation
Dinh, Huyen H.
Unknown Affiliation
Doddapaneni, Harshavardhan
Unknown Affiliation
Drummond, Jennifer A.
Unknown Affiliation
Gibbs, Richard A.
Unknown Affiliation
Hale, Walker
Unknown Affiliation
Han, Yi
Unknown Affiliation
Korchina, Viktoriya
Unknown Affiliation
Lee, Sandra L.
Unknown Affiliation
Lewis, Lora R.
Unknown Affiliation
Li, Wei
Unknown Affiliation
Morgan, Margaret B.
Unknown Affiliation
Muzny, Donna Marie
Unknown Affiliation
Wang, Linghua
Unknown Affiliation
Wheeler, David A.
Unknown Affiliation
Fronick, Catrina C.
Unknown Affiliation
Fulton, Robert S.
Unknown Affiliation
Mardis, Elaine R.
Unknown Affiliation
Wilson, Richard K.
Unknown Affiliation
Paulauskis, Joseph D.
Unknown Affiliation
Bowen, Jay
Unknown Affiliation
Gastier-Foster, Julie M.
Unknown Affiliation
Ramirez, Nilsa C.
Unknown Affiliation
Zmuda, Erik J.
Unknown Affiliation
Corcoran, Niall M.
Unknown Affiliation
Hovens, Christopher M.
Unknown Affiliation
Carvalho, André Lopes
Unknown Affiliation
Humberto Fregnani, Jose
Unknown Affiliation
Longatto-Filho, Adhemar
Unknown Affiliation
Reis, Rui Manuel Vieira
Unknown Affiliation
Castro, Patricia D.
Unknown Affiliation
Ittmann, Michael M.
Unknown Affiliation
Huntsman, David G.
Unknown Affiliation
Warnick, Ronald E.
Unknown Affiliation
Cramer, Daniel William
Unknown Affiliation
Kibel, Adam S.
Unknown Affiliation
Barnholtz-Sloan, Jill S.
Unknown Affiliation
De Rose, Agostino Maria
Unknown Affiliation
Giuliante, Felice
Unknown Affiliation
Goodman, Marc T.
Unknown Affiliation
Karlan, Beth Y.
Unknown Affiliation
Somiari, Stella B.
Unknown Affiliation
Lacombe, Louis
Unknown Affiliation
Chabot, John A.
Unknown Affiliation
Desjardins, Laurence C.
Unknown Affiliation
Sastre-Garau, Xavier X.
Unknown Affiliation
Stern, Marc Henri
Unknown Affiliation
Signoretti, Sabina
Unknown Affiliation
Berchuck, Andrew
Unknown Affiliation
Brat, Daniel J.
Unknown Affiliation
Delman, Keith A.
Unknown Affiliation
Khuri, Fadlo R.
Unknown Affiliation
Magliocca, Kelly R.
Unknown Affiliation
Owonikoko, Taofeek Kunle
Unknown Affiliation
Ramalingam, Suresh S.
Unknown Affiliation
Shin, Dongmoon
Unknown Affiliation
Looijenga, Leendert H.J.
Unknown Affiliation
Oosterhuis, Wolter J.W.
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Chen, Chu
Unknown Affiliation
Houck, John
Unknown Affiliation
Hartmann, Arndt
Unknown Affiliation
Stoehr, Robert
Unknown Affiliation
Wullich, Bernd
Unknown Affiliation
Noushmehr, Houtan
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Girard, Nicolas
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Campo, Elías
Unknown Affiliation
Colman, Howard
Unknown Affiliation
Martignetti, John A.
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Akeredolu, Teniola
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Birrer, Michael J.
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Borad, Mitesh J.
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Copland, John A.
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Ho, Thai Huu
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Patel, Tushar P.
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Olson, Gloria Moy
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Roberts, Lewis Rowland
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Smallridge, Robert C.
Unknown Affiliation
Torbenson, Michael S.
Unknown Affiliation
Yang, Ju Dong
Unknown Affiliation
Brimo, Fadi
Unknown Affiliation
Fujimoto, Jyunya
Unknown Affiliation
Logothetis, Christopher J.
Unknown Affiliation
Meric-Bernstam, Funda
Unknown Affiliation
Moran, César A.
Unknown Affiliation
Rimner, Andreas C.
Unknown Affiliation
Sood, Anil K.
Unknown Affiliation
Tamboli, Pheroze
Unknown Affiliation
Tsao, Anne S.
Unknown Affiliation
Wistuba, Ignacio Ivans
Unknown Affiliation
Lee, Kenneth K.W.
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Scolyer, Richard A.
Unknown Affiliation
Spillane, Andrew John
Unknown Affiliation
Wilmott, James S.
Unknown Affiliation
Chan, Timothy A.
Unknown Affiliation
Smith, Jennifer Anne
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Kebebew, Electron K.
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Pacak, Karel
Unknown Affiliation
Pinto, Peter A.
Unknown Affiliation
Schiffman, Mark H.
Unknown Affiliation
Wentzensen, Nicolas A.
Unknown Affiliation
Pass, Harvey Ira
Unknown Affiliation
Bartlett, John M.S.
Unknown Affiliation
Gilbert, Sebastien
Unknown Affiliation
Sekhon, Harman S.
Unknown Affiliation
Hayward, Nicholas K.
Unknown Affiliation
Marino, Mirella
Unknown Affiliation
Gimenez-Roqueplo, Anne Paule
Unknown Affiliation
Birsoy, Kivanç
Unknown Affiliation
Barnett, Gene H.
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Brewer, Cathy J.
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Farver, Carol F.
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Pennell, Nathan A.
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Morrison, Carl D.
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Manikhas, Georgiy Moiseevich
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Alvaro, Domenico
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Dubina, Michael V.
Unknown Affiliation
Dhanasekaran, Renumathy
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Slotta-Huspenina, Julia B.
Unknown Affiliation
Abdel-Rahman, Mohamed H.
Unknown Affiliation
Cebulla, Colleen M.
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Pilarski, Robert T.
Unknown Affiliation
Rai, Karan
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Schoenfield, Lynn R.
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Grizzle, William E.
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Porten, Sima P.
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Asa, Sylvia L.
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Schadendorf, Dirk
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Graefen, Markus
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Huland, Hartwig
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Sauter, Guido
Unknown Affiliation
Schlomm, Thorsten
Unknown Affiliation
Simon, Ronald
Unknown Affiliation
Tennstedt, Pierre
Unknown Affiliation
Bathe, Oliver F.
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Carroll, Peter R.
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DiSaia, Philip John
Unknown Affiliation
Kelley, Robin Kate
Unknown Affiliation
Phillips, Joanna J.
Unknown Affiliation
Simko, Jeffry P.
Unknown Affiliation
Smith-McCune, Karen K.
Unknown Affiliation
Hernandez, Brenda Y.
Unknown Affiliation
Herold-Mende, Christel C.
Unknown Affiliation
Unterberg, Andreas Wilhelm
Unknown Affiliation
von Deimling, Andreas
Unknown Affiliation
Godwin, Andrew K.
Unknown Affiliation
Adebamowo, Clement
Unknown Affiliation
Adebamowo, Sally N.
Unknown Affiliation
Boussioutas, Alex
Unknown Affiliation
Mès-Masson, Anne Marie
Unknown Affiliation
Saad, Fred
Unknown Affiliation
Walker, Joan L.
Unknown Affiliation
Dhir, Rajiv J.
Unknown Affiliation
Luketich, James D.
Unknown Affiliation
Agnew, Kathy J.
Unknown Affiliation
Creaney, Jenette
Unknown Affiliation
Robinson, Bruce Gregory
Unknown Affiliation
Shelley, Carl Simon
Unknown Affiliation
Bradford, Carol R.
Unknown Affiliation
Fong, Kwun M.
Unknown Affiliation
Yang, Ian A.
Unknown Affiliation
Hooke, Jeffrey A.
Unknown Affiliation
Kovatich, Albert J.
Unknown Affiliation
Shriver, Craig D.
Unknown Affiliation
DIpersio, John F.
Unknown Affiliation
Drake, Bettina Fisher
Unknown Affiliation
Van Tine, Brian A.
Unknown Affiliation
Statistics
Citations: 1,716
Authors: 265
Affiliations: 13
Identifiers
Doi:
10.1016/j.cell.2018.02.052
ISSN:
00928674
Research Areas
Cancer
Genetics And Genomics
Study Design
Grounded Theory