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Publication Details
AFRICAN RESEARCH NEXUS
SHINING A SPOTLIGHT ON AFRICAN RESEARCH
agricultural and biological sciences
Gateways to the FANTOM5 promoter level mammalian expression atlas
Genome Biology, Volume 16, No. 1, Article 22, Year 2015
Notification
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Description
The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas. © 2015 Lizio et al.; licensee BioMed Central.
Authors & Co-Authors
Lizio, Marina
Japan, Yokohama
Riken Yokohama Institute
Japan, Wako
Riken
Harshbarger, Jayson
Japan, Yokohama
Riken Yokohama Institute
Japan, Wako
Riken
Severin, Jessica M.
Japan, Yokohama
Riken Yokohama Institute
Japan, Wako
Riken
Kasukawa, Takeya
Japan, Wako
Riken
Abugessaisa, Imad
Japan, Wako
Riken
Fukuda, Shiro
Japan, Yokohama
Riken Yokohama Institute
Hori, Fumi
Japan, Yokohama
Riken Yokohama Institute
Japan, Wako
Riken
Kato, Sachi
Japan, Yokohama
Riken Yokohama Institute
Japan, Wako
Riken
Mungall, Christopher John
United States, Berkeley
Lawrence Berkeley National Laboratory
Arner, Erik
Japan, Yokohama
Riken Yokohama Institute
Japan, Wako
Riken
Baillie, J. Kenneth
United Kingdom, Midlothian
University of Edinburgh, Roslin Institute
Bertin, Nicolas
Japan, Yokohama
Riken Yokohama Institute
Japan, Wako
Riken
Singapore, Singapore City
National University of Singapore
Bono, Hidemasa U.
Japan, Minato
Research Organization of Information and Systems
De Hoon, Michiel Jl L.
Japan, Yokohama
Riken Yokohama Institute
Japan, Wako
Riken
Diehl, Alexander D.
United States, Buffalo
University at Buffalo, the State University of new York
Dimont, Emmanuel
United States, Boston
Harvard T.h. Chan School of Public Health
Freeman, Tom C.
United Kingdom, Midlothian
University of Edinburgh, Roslin Institute
Hide, Winston A.
United States, Boston
Harvard T.h. Chan School of Public Health
United Kingdom, Sheffield
The University of Sheffield
Katayama, Toshiaki
Japan, Minato
Research Organization of Information and Systems
Lassmann, Timo
Japan, Yokohama
Riken Yokohama Institute
Japan, Wako
Riken
Australia, Perth
The University of Western Australia
Meehan, Terrence F.
United Kingdom, Hinxton
Embl’s European Bioinformatics Institute
Rehli, Michael
Germany, Regensburg
Klinikum Der Universität Regensburg Und Medizinische Fakultät
Sandelin, Albin
Denmark, Copenhagen
Københavns Universitet
't Hoen, Peter A.C.
Netherlands, Leiden
Leids Universitair Medisch Centrum
Thompson, Mark K.
Netherlands, Leiden
Leids Universitair Medisch Centrum
Daub, Carsten Olivier
Japan, Yokohama
Riken Yokohama Institute
Itoh, Masayoshi
Japan, Yokohama
Riken Yokohama Institute
Japan, Wako
Riken
Carninci, Piero
Japan, Yokohama
Riken Yokohama Institute
Japan, Wako
Riken
Hayashizaki, Yoshihide
Japan, Yokohama
Riken Yokohama Institute
Japan, Wako
Riken
Forrest, Alistair R.R.
Japan, Yokohama
Riken Yokohama Institute
Japan, Wako
Riken
Kawaji, Hideya
Japan, Yokohama
Riken Yokohama Institute
Japan, Wako
Riken
Statistics
Citations: 515
Authors: 31
Affiliations: 15
Identifiers
Doi:
10.1186/s13059-014-0560-6
ISSN:
14747596
Research Areas
Health System And Policy