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Publication Details
AFRICAN RESEARCH NEXUS
SHINING A SPOTLIGHT ON AFRICAN RESEARCH
Mitochondrial genome sequencing in mesolithic North East Europe unearths a new sub-clade within the broadly distributed human haplogroup C1
PLoS ONE, Volume 9, No. 2, Article e87612, Year 2014
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Description
The human mitochondrial haplogroup C1 has a broad global distribution but is extremely rare in Europe today. Recent ancient DNA evidence has demonstrated its presence in European Mesolithic individuals. Three individuals from the 7,500 year old Mesolithic site of Yuzhnyy Oleni Ostrov, Western Russia, could be assigned to haplogroup C1 based on mitochondrial hypervariable region I sequences. However, hypervariable region I data alone could not provide enough resolution to establish the phylogenetic relationship of these Mesolithic haplotypes with haplogroup C1 mitochondrial DNA sequences found today in populations of Europe, Asia and the Americas. In order to obtain high-resolution data and shed light on the origin of this European Mesolithic C1 haplotype, we target-enriched and sequenced the complete mitochondrial genome of one Yuzhnyy Oleni Ostrov C1 individual. The updated phylogeny of C1 haplogroups indicated that the Yuzhnyy Oleni Ostrov haplotype represents a new distinct clade, provisionally coined "C1f". We show that all three C1 carriers of Yuzhnyy Oleni Ostrov belong to this clade. No haplotype closely related to the C1f sequence could be found in the large current database of ancient and present-day mitochondrial genomes. Hence, we have discovered past human mitochondrial diversity that has not been observed in modern-day populations so far. The lack of positive matches in modern populations may be explained by under-sampling of rare modern C1 carriers or by demographic processes, population extinction or replacement, that may have impacted on populations of Northeast Europe since prehistoric times. © 2014 Der Sarkissian et al.
Available Materials
https://efashare.b-cdn.net/share/pmc/articles/PMC3913659/bin/pone.0087612.s001.pdf
https://efashare.b-cdn.net/share/pmc/articles/PMC3913659/bin/pone.0087612.s002.pdf
https://efashare.b-cdn.net/share/pmc/articles/PMC3913659/bin/pone.0087612.s003.pdf
https://efashare.b-cdn.net/share/pmc/articles/PMC3913659/bin/pone.0087612.s004.pdf
Authors & Co-Authors
Der Sarkissian, Clio S.I.
Australia, Adelaide
The University of Adelaide
Denmark, Copenhagen
Statens Naturhistoriske Museum
Brotherton, Paul M.
Australia, Adelaide
The University of Adelaide
United Kingdom, Huddersfield
University of Huddersfield
Balanovsky, Oleg P.
Russian Federation, Moscow
Vavilov Institute of General Genetics, Russian Academy of Sciences
Russian Federation, Moscow
Research Centre for Medical Genetics
Templeton, Jennifer E.L.
Australia, Adelaide
The University of Adelaide
Australia, Adelaide
Flinders University
Llamas, Bastien
Australia, Adelaide
The University of Adelaide
Soubrier, Julien
Australia, Adelaide
The University of Adelaide
Moiseyev, Vyacheslav G.
Russian Federation, Saint Petersburg
Peter the Great Museum of Anthropology and Ethnography
Khartanovich, Valery I.
Russian Federation, Saint Petersburg
Peter the Great Museum of Anthropology and Ethnography
Cooper, Alan C.
Australia, Adelaide
The University of Adelaide
Haak, Wolfgang
Australia, Adelaide
The University of Adelaide
Adhikarla, Syama
India, Madurai
Madurai Kamaraj University
Adler, Christina J.
Australia, Adelaide
The University of Adelaide
Bertranpetit, Jaume
Spain, Barcelona
Universitat Pompeu Fabra Barcelona
Clarke, Andrew C.
New Zealand, Dunedin
University of Otago
Comas, D.
Spain, Barcelona
Universitat Pompeu Fabra Barcelona
Dulik, Matthew C.
United States, Philadelphia
University of Pennsylvania
Gaieski, Jill Bennett
United States, Philadelphia
University of Pennsylvania
Haber, Marc E.
Spain, Barcelona
Universitat Pompeu Fabra Barcelona
Prasad, Arun Kumar Ganesh
India, Madurai
Madurai Kamaraj University
Jin, Li
China, Shanghai
Fudan University
Kaplan, Matthew E.
United States, Tucson
The University of Arizona
Li, Shilin
China, Shanghai
Fudan University
Martínez-Cruz, Begoña
Spain, Barcelona
Universitat Pompeu Fabra Barcelona
Matisoo-Smith, Elizabeth A.
New Zealand, Dunedin
University of Otago
Merchant, Nirav C.
United States, Tucson
The University of Arizona
Mitchell, Robert John
Australia, Melbourne
La Trobe University
Owings, Amanda C.
United States, Philadelphia
University of Pennsylvania
Parida, Laxmi P.
United States, Armonk
International Business Machines
Pitchappan, Ramasamy M.
India, Madurai
Madurai Kamaraj University
Platt, Daniel E.
United States, Armonk
International Business Machines
Quintana-Murci, Lluís
France, Paris
Institut Pasteur, Paris
Renfrew, Colin
United Kingdom, Cambridge
University of Cambridge
Lacerda, Daniela Rodrigues
Brazil, Belo Horizonte
Universidade Federal de Minas Gerais
Royyuru, Ajay K.
United States, Armonk
International Business Machines
Santos, Fabrício Rodrigues Dos
Brazil, Belo Horizonte
Universidade Federal de Minas Gerais
Schurr, Theodore G.
United States, Philadelphia
University of Pennsylvania
Soodyall, Himla
South Africa, Johannesburg
National Health Laboratory Service
Hernanz, David F.Soria
United States, Washington, D.c.
National Geographic Society
Swamikrishnan, Pandikumar
United States, Armonk
International Business Machines
Tyler-Smith, Chris
United Kingdom, Hinxton
Wellcome Sanger Institute
Santhakumari, Arun Varatharajan
India, Madurai
Madurai Kamaraj University
Vieira, Pedro Paulo R.
Brazil, Rio de Janeiro
Universidade Federal do Rio de Janeiro
Vilar, Miguel G.
United States, Philadelphia
University of Pennsylvania
Wells, R. Spencer
United States, Washington, D.c.
National Geographic Society
Zalloua, Pierre A.
Lebanon, Beirut
Lebanese American University
Ziegle, Janet S.
United States, Foster City
Applied Biosystems Usa
Statistics
Citations: 46
Authors: 46
Affiliations: 24
Identifiers
Doi:
10.1371/journal.pone.0087612
e-ISSN:
19326203
Research Areas
Genetics And Genomics
Study Design
Cross Sectional Study