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Publication Details
AFRICAN RESEARCH NEXUS
SHINING A SPOTLIGHT ON AFRICAN RESEARCH
general
Setting a baseline for global urban virome surveillance in sewage
Scientific Reports, Volume 10, No. 1, Article 13748, Year 2020
Notification
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Description
The rapid development of megacities, and their growing connectedness across the world is becoming a distinct driver for emerging disease outbreaks. Early detection of unusual disease emergence and spread should therefore include such cities as part of risk-based surveillance. A catch-all metagenomic sequencing approach of urban sewage could potentially provide an unbiased insight into the dynamics of viral pathogens circulating in a community irrespective of access to care, a potential which already has been proven for the surveillance of poliovirus. Here, we present a detailed characterization of sewage viromes from a snapshot of 81 high density urban areas across the globe, including in-depth assessment of potential biases, as a proof of concept for catch-all viral pathogen surveillance. We show the ability to detect a wide range of viruses and geographical and seasonal differences for specific viral groups. Our findings offer a cross-sectional baseline for further research in viral surveillance from urban sewage samples and place previous studies in a global perspective. © 2020, The Author(s).
Available Materials
https://efashare.b-cdn.net/share/pmc/articles/PMC7426863/bin/41598_2020_69869_MOESM1_ESM.xlsx
Authors & Co-Authors
Nieuwenhuijse, David F.
Netherlands, Rotterdam
Erasmus Mc
Oude-Munnink, Bas B.
Netherlands, Rotterdam
Erasmus Mc
Phan, My V.T.
Netherlands, Rotterdam
Erasmus Mc
Hendriksen, Rene Sjøgren
Denmark, Lyngby
Technical University of Denmark
Bego, Artan
Albania, Tirana
Institute of Public Health Albania
Rees, Catherine A.
Australia, Melbourne
Melbourne Water Corporation
Neilson, Elizabeth H.J.
Denmark, Copenhagen
Københavns Universitet
Coventry, Kris
Unknown Affiliation
Collignon, Peter J.
Australia, Canberra
Canberra Hospital
Allerberger, Franz J.
Austria, Vienna
Austrian Agency for Health and Food Safety
Rahube, Teddie O.
Botswana, Palapye
Botswana International University of Science and Technology
Oliveira, Guilherme Corrêa De
Brazil, Ouro Preto
Instituto Tecnológico Vale
Ivanov, Ivan Nikolaev
Bulgaria, Sofia
National Center of Infectious and Parasitic Diseases Bulgaria
Sopheak, Thet
Cambodia, Phnom Penh
Institut Pasteur du Cambodge
Vuthy, Yith
Cambodia, Phnom Penh
Institut Pasteur du Cambodge
Yost, Christopher Karl
Canada, Regina
University of Regina
Tabo, Djim Adjim
Chad, N'djamena
University of N’djamena
Cuadros-Orellana, Sara
Chile, Talca
Universidad Católica Del Maule
Ke, Changwen
China, Guangzhou
Guangdong Center for Disease Control and Prevention
Zheng, Huanying
China, Guangzhou
Guangdong Center for Disease Control and Prevention
Baisheng, Li
China, Guangzhou
Guangdong Center for Disease Control and Prevention
Jiao, Xiaoyang
China, Shantou
Shantou University Medical College
Donado-Godoy, Pilar
Colombia, Bogota
Corporación Colombiana de Investigación Agropecuaria, Agrosavia
Coulibaly, Kalpy Julien
Cote D'ivoire, Abidjan
Institut Pasteur de Cote-d'ivoire
Hrenović, Jasna J. J.
Croatia, Zagreb
University of Zagreb
Jergović, Matijana
Croatia, Zagreb
Zagreb Institute of Public Health
Karpíšková, Renáta
Czech Republic, Brno
Veterinary Research Institute, Brno
Elsborg, Bodil
Unknown Affiliation
Legesse, Mengistu
Ethiopia, Addis Ababa
Addis Ababa University
Eguale, Tadesse
Ethiopia, Addis Ababa
Addis Ababa University
Heikinheimo, Annamari
Finland, Helsinki
Helsingin Yliopisto
Villacis, Jose Eduardo
Unknown Affiliation
Sanneh, Bakary
Gambia, Kotu
Ministry of Health and Social Welfare
Malania, Lile
Georgia, Tbilisi
National Center for Disease Control and Public Health
Nitsche, Andreas
Germany, Berlin
Robert Koch Institute
Brinkmann, Annika
Germany, Berlin
Robert Koch Institute
Saba, Courage Kosi Setsoafia
Ghana, Tamale
University for Development Studies Ghana
Kocsis, Béla
Hungary, Budapest
Semmelweis Egyetem
Solymosi, Norbert
Hungary, Budapest
University of Veterinary Medicine Budapest
Thorsteinsdottir, Thorunn Rafnar
Iceland, Reykjavik
Haskoli Islands
Mohamed Hatha, Abdulla
India, Kochi
Cochin University of Science and Technology
Alebouyeh, Masoud
Iran, Tehran
Shahid Beheshti University of Medical Sciences
Morris, Dearbháile
Ireland, Galway
University of Galway
O’Connor, Louise
Ireland, Galway
University of Galway
Cormican, Martin G.M.
Ireland, Galway
University of Galway
Moran-Gilad, Jacob
Israel, Jerusalem
Ministry of Health
Battisti, Antonio
Italy, Rome
Istituto Zooprofilattico Sperimentale Delle Regioni Lazio e Toscana
Alba, Patricia
Italy, Rome
Istituto Zooprofilattico Sperimentale Delle Regioni Lazio e Toscana
Shakenova, Zeinegul
Unknown Affiliation
Kiiyukia, Ciira
Kenya, Thika
Mount Kenya University
Ng’eno, Eric
Kenya, Nairobi
Kenya Medical Research Institute
Raka, Lul
Serbia, Pristina
National Institute of Public Health of Kosovo
Berzins, Aivars
Latvia, Riga
Institute of Food Safety, Animal Health and Environment - Bior
Avsejenko, Jelena
Latvia, Riga
Institute of Food Safety, Animal Health and Environment - Bior
Bartkevics, Vadims
Latvia, Riga
Institute of Food Safety, Animal Health and Environment - Bior
Penny, Christian
Luxembourg, Esch-sur-alzette
Luxembourg Institute of Science and Technology
Heera, Rajandas
Unknown Affiliation
Parimannan, Sivachandran
Unknown Affiliation
Haber, Malcolm Vella
Unknown Affiliation
Pal, Pushkar
Unknown Affiliation
Schmitt, Heike
Netherlands, Bilthoven
Rijksinstituut Voor Volksgezondheid en Milieu
van Passel, Mark W.J.
Netherlands, Bilthoven
Rijksinstituut Voor Volksgezondheid en Milieu
van de Schans, Milou G.M.
Netherlands, Wageningen
Wageningen University & Research
Zuidema, Tina
Netherlands, Wageningen
Wageningen University & Research
Jeunen, Gert Jan
New Zealand, Dunedin
University of Otago
Gemmell, Neil J.
New Zealand, Dunedin
University of Otago
Fashae, Kayode F.
Nigeria, Ibadan
University of Ibadan
Wester, Astrid Louise
Norway, Oslo
Folkehelseinstituttet
Holmstad, Rune
Unknown Affiliation
Hasan, Rumina S.
Pakistan, Karachi
The Aga Khan University
Shakoor’, Sadia
Pakistan, Karachi
The Aga Khan University
Rojas, Maria Luz Zamudio
Peru, Lima
Instituto Nacional de Salud, Lima
Wasyl, Dariusz
Poland, Pulawy
Państwowy Instytut Weterynaryjny - Państwowy Instytut Badawczy
Bosevska, Golubinka
North Macedonia, Skopje
Institute of Public Health of the Republic of North Macedonia
Kochubovski, Mihail V.
North Macedonia, Skopje
Institute of Public Health of the Republic of North Macedonia
Radu, Cojocaru
Moldova, Chisinau
Nicolae Testemitanu State University of Medicine and Pharmacy
Gassama†, Amy
Senegal, Dakar
Institut Pasteur de Dakar
Radosavljević, Vladimir I.
Serbia, Belgrade
University of Belgrade Faculty of Veterinary Medicine
Tay, Moon Yue Feng
Singapore, Singapore City
Nanyang Technological University
Zuniga-Montanez, Rogelio E.
Singapore, Singapore City
Singapore Centre for Environmental Life Sciences Engineering
Wuertz, Stefan
Singapore, Singapore City
Singapore Centre for Environmental Life Sciences Engineering
Gavačová, Dagmar
Slovakia, Bratislava
Public Health Authority of the Slovak Republic
Trkov, Marija
Unknown Affiliation
Keddy, Karen Helena
South Africa, Johannesburg
University of the Witwatersrand
Esterhuyse, Kerneels
South Africa, Pretoria
Daspoort Waste Water Treatment Works
Cerdà-Cuèllar, Marta
Spain, Cerdanyola Del Valles
Universitat Autònoma de Barcelona
Pathirage, Sujatha
Unknown Affiliation
Larsson, D. G.Joakim
Sweden, Gothenburg
Göteborgs Universitet
Norrgren, Leif
Sweden, Uppsala
Sveriges Lantbruksuniversitet
Örn, Stefan
Sweden, Uppsala
Sveriges Lantbruksuniversitet
van der Heijden, Tanja
Unknown Affiliation
Kumburu, Happiness Houka
Tanzania, Moshi
Kilimanjaro Clinical Research Institute
de RodaHusman, Ana Maria
Unknown Affiliation
Njanpop-Lafourcade, Berthe Marie
Unknown Affiliation
Bidjada, Pawou
Togo, Lome
National Institute of Hygiene
Nikiema-Pessinaba, Somtinda Christelle
Unknown Affiliation
Levent, Belkıs
Unknown Affiliation
Meschke, John Scott
United States, Seattle
University of Washington
Beck, Nicola Koren
United States, Seattle
University of Washington
Kwenda, Geoffrey
Zambia, Lusaka
University of Zambia
Munk, Patrick
Denmark, Lyngby
Technical University of Denmark
Aarestrup, Frank Møller
Denmark, Lyngby
Technical University of Denmark
Cotten, Matt
Netherlands, Rotterdam
Erasmus Mc
Koopmans, Marion P.G.
Netherlands, Rotterdam
Erasmus Mc
Statistics
Citations: 38
Authors: 104
Affiliations: 65
Identifiers
Doi:
10.1038/s41598-020-69869-0
ISSN:
20452322
Research Areas
Health System And Policy
Study Design
Cross Sectional Study
Study Approach
Qualitative