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Publication Details
AFRICAN RESEARCH NEXUS
SHINING A SPOTLIGHT ON AFRICAN RESEARCH
biochemistry, genetics and molecular biology
The genome of woodland strawberry (Fragaria vesca)
Nature Genetics, Volume 43, No. 2, Year 2011
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Description
The woodland strawberry, Fragaria vesca (2n = 2x = 14), is a versatile experimental plant system. This diminutive herbaceous perennial has a small genome (240 Mb), is amenable to genetic transformation and shares substantial sequence identity with the cultivated strawberry (Fragaria Ã- ananassa) and other economically important rosaceous plants. Here we report the draft F. vesca genome, which was sequenced to ×-39 coverage using second-generation technology, assembled de novo and then anchored to the genetic linkage map into seven pseudochromosomes. This diploid strawberry sequence lacks the large genome duplications seen in other rosids. Gene prediction modeling identified 34,809 genes, with most being supported by transcriptome mapping. Genes critical to valuable horticultural traits including flavor, nutritional value and flowering time were identified. Macrosyntenic relationships between Fragaria and Prunus predict a hypothetical ancestral Rosaceae genome that had nine chromosomes. New phylogenetic analysis of 154 protein-coding genes suggests that assignment of Populus to Malvidae, rather than Fabidae, is warranted. © 2011 Nature America, Inc. All rights reserved.
Authors & Co-Authors
Shulaev, Vladimir
Unknown Affiliation
Sargent, Daniel James
Unknown Affiliation
Crowhurst, Ross N.
Unknown Affiliation
Mockler, Todd C.
Unknown Affiliation
Folkerts, Otto
Unknown Affiliation
Delcher, Arthur L.
Unknown Affiliation
Jaiswal, Pankaj
Unknown Affiliation
Mockaitis, Keithanne
Unknown Affiliation
Liston, Aaron
Unknown Affiliation
Mane, Shrinivasrao P.
Unknown Affiliation
Burns, Paul
Unknown Affiliation
Davis, Thomas M.
Unknown Affiliation
Slovin, Janet P.
Unknown Affiliation
Bassil, Nahla
Unknown Affiliation
Hellens, Roger P.
Unknown Affiliation
Evans, Clive
Unknown Affiliation
Harkins, Timothy T.
Unknown Affiliation
Kodira, Chinnappa Dilip
Unknown Affiliation
Desany, Brian A.
Unknown Affiliation
Crasta, Oswald R.
Unknown Affiliation
Jensen, Roderick V.
Unknown Affiliation
Allan, Andrew Charles
Unknown Affiliation
Michael, Todd P.
Unknown Affiliation
Setubal, João Carlos
Unknown Affiliation
Celton, Jean Marc
Unknown Affiliation
Rees, David Jasper Gilbert
Unknown Affiliation
Williams, Kelly P.
Unknown Affiliation
Holt, Sarah H.
Unknown Affiliation
Rojas, Juan Jairo Ruiz
Unknown Affiliation
Chatterjee, Mithu
Unknown Affiliation
Liu, Bo
Unknown Affiliation
Silva, Herman
Unknown Affiliation
Meisel, Lee
Unknown Affiliation
Adato, Avital
Unknown Affiliation
Filichkin, Sergei A.
Unknown Affiliation
Troggio, Michela
Unknown Affiliation
Viola, Roberto E.
Unknown Affiliation
Ashman, Tia Lynn
Unknown Affiliation
Wang, Hao
Unknown Affiliation
Dharmawardhana, Palitha
Unknown Affiliation
Elser, Justin
Unknown Affiliation
Raja, Rajani
Unknown Affiliation
Priest, Henry D.
Unknown Affiliation
Bryant, Douglas W.
Unknown Affiliation
Fox, Samuel E.
Unknown Affiliation
Givan, Scott A.
Unknown Affiliation
Wilhelm, Larry J.
Unknown Affiliation
Naithani, Sushma
Unknown Affiliation
Christoffels, Alan G.
Unknown Affiliation
Salama, David Y.
Unknown Affiliation
Carter, Jade
Unknown Affiliation
Girona, Elena Lopez
Unknown Affiliation
Zdepski, Anna
Unknown Affiliation
Wang, Wenqin
Unknown Affiliation
Kerstetter, Randall A.
Unknown Affiliation
Schwab, Wilfried
Unknown Affiliation
Korban, Schuyler S.
Unknown Affiliation
Davik, Jahn
Unknown Affiliation
Monfort, Amparo
Unknown Affiliation
Denoyes-Rothan, Beatrice
Unknown Affiliation
Arús, Pere
Unknown Affiliation
Mittler, Ron
Unknown Affiliation
Flinn, Barry
Unknown Affiliation
Aharoni, Asaph
Unknown Affiliation
Bennetzen, Jeffrey L.
Unknown Affiliation
Salzberg, Steven L.
Unknown Affiliation
Dickerman, Allan
Unknown Affiliation
Velasco, R.
Unknown Affiliation
Borodovsky, Mark Yu
Unknown Affiliation
Veilleux, Richard E.
Unknown Affiliation
Folta, Kevin M.
Unknown Affiliation
Statistics
Citations: 1,091
Authors: 71
Affiliations: 32
Identifiers
Doi:
10.1038/ng.740
ISSN:
10614036
e-ISSN:
15461718
Research Areas
Genetics And Genomics
Health System And Policy